So to sum up for anyone reading this in the future -
It looks an easy job at first glance and yes actual fitting is childs play, getting it right is not quite as easy.
So top tips -
1) When you connect the new cylinder up leave it dangling over a container and open the bleed nipple. Keep it open until fluid is a nice constant stream. Take care to keep the reservoir full and only use gravity.
2) Close the nipple then fully cycle the cylinder pushing it fully home then let it return on it's own. Do this a fair few times.
3) Offer up the cylinder on to the studs, making sure you locate the shaft end in to the divot on the throw out lever ( if you're not sure get your fingers in the bell housing and have a feel, you'll see what i mean).
4) Bolt in the cylinder hopefully it will need alot of force to push it in from about 35mm away from home. If not don't worry just yet.
5) Bleed the cylinder properly with proper equipment, i use a gunson easy bleed. This will ensure a good bleed.
6) Once bled disconnect the kit and try the pedal. If it feels sloppy then you still have air in the cylinder.
7) Get underneath again and undo the cylinder, not the pipe!!!
Now cycle it fully multiple times until it's super stiff this will push out any remaining air. Keep doing this until when you go to refit the cylinder it needs alot of force to push it on to the studs from 30-40mm away.
Bolt it back on and you should be ready to go. The pedal should have a nice consistant feel to it now aswell.
Hope this helps