I am thinking loud now.
what can cause an abs pump to send fluid only to the front?
Could it be the traction control? Could the system be puzzled and think that the front is doind a skid? I do not know.
are all the fuses of the traction control ok? Are they different from the abs ones?
Since the rear brake lines are free, no clots, and fluid passes through them with the pump disconnected we exclude them.
So its some sort of electrical curquit that controls the pump and its telling it not to send fluid to the rear...
What can be the cause?
A fuse, bad wiring, the ecu, a sensor and what else am I missing?
Can you just hotwire the pump off the car and see what gives?
Have you scanned the car with a modern reliable reader?
Maybe I am just writing a bunch of bs, but this is really extremely strange.
I googled "bmw e36 rear brakes not bleed" and then tried also "z3" and then just bmw and some cases came up but the one and only that looked like yours was a dead end because the OP never bothered to come back and report if it was ever solved...
I think maybe you should gather the ZedShed think tank for brainstorming with this one. And maybe find a willing person to lend you his ecu for testing...
Terribly sorry I can not help much.