Mystery solved. And I thought it was worth sharing.
I cleared the adaptations, changed the spark plugs, changed the MAF, swapped the coils, checked the intake boot for cracks, checked the upper vacuum connections for cracks and misfire still there.
I picked up one clue along the way that I didn't get the significance of at the time. The plug on cylinder 4 (the misfiring one) came out with a glistening electrode that quickly evaporated... I'm guessing unburnt fuel.
I thought again about where the error may have crept in. Remembering this engine was running lovely in the breaker. It either had to be a part of the engine that was an unknown commodity not carried over from the donor car but on the project car (which had never run - it came with a dead engine). Or something I bust on the donor engine as it moved over.
So I had another think about the former theory. Fuel pump, fuel filter and DME came to mind as to what could be faulty on the project car. And what wasn't brought across from the known good donor.
So the DME came out with the intention of opening it up to look for a fried component. But I never got that far. One of the pins was corroded. Not easy to see but look for subtly different colour of the bottom left pin.
And further more when I looked up what the pin did it controlled the coil of cylinder 4. The misfiring one! A quick clean up with some emery cloth and now running smooth as you like! Phew.
I guess the petrol on the spark plug was fuel being injected and not igniting due to the unpowered coil. The error was a burn fail. I guess that's exactly what was happening. Hindsight's a great thing isn't it!
I can't help wondering if that corroded pin had been like it when the project car was still running with the old engine before it threw the lump of metal that shot through the sump - the one thing I could tell from the dead engine. Had the previous owner run the car for a long period with a dead cylinder? Can a dead cylinder carried for long enough cause a break up of the engine internally? Possibly from an inbalance and loosening a component like a con rod bolt? I'm struggling to believe that but you never know.